Plant Evolutionary Cell Biology

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Selected Publications

Fürtauer, L., Küstner, L., Weckwerth, W., Heyer, A.G. and Nägele, T. (2019) Resolving subcellular plant metabolism. THE PLANT JOURNAL, DOI:

Küstner, L., Fürtauer, L., Weckwerth, W., Nägele, T. and Heyer, A.G. (2019) Subcellular dynamics of proteins and metabolites under abiotic stress reveal deferred response of the Arabidopsis thaliana hexokinase-1 mutant gin2-1 to high light. THE PLANT JOURNAL, DOI:

Fürtauer L, Pschenitschnigg A, Scharkosi H, Weckwerth W, Nägele T (2018) Combined multivariate analysis and machine learning reveals a predictive module of metabolic stress response in Arabidopsis thaliana. MOLECULAR OMICS 14,437-449. DOI:

Weiszmann J, Fürtauer L, Weckwerth W, Nägele T (2018) Vacuolar sucrose cleavage prevents limitation of cytosolic carbohydrate metabolism and stabilizes photosynthesis under abiotic stress. THE FEBS JOURNAL 285,4082-4098. DOI:

Lisa Fürtauer, Jakob Weiszmann, Wolfram Weckwerth and Thomas Nägele: Mathematical modelling approaches in plant metabolomics. In: António C ed. Plant Metabolomics: Methods and Protocols. New York, NY: Springer New York, 329-347. DOI:

Pedrotti L, Weiste C, Nägele T, Wolf E, Lorenzin F, Dietrich K, Mair A, Weckwerth W, Teige M, Baena-González E, et al. (2018) Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. THE PLANT CELL 30, 495-509. DOI:

Hoermiller, II, Naegele, T., Augustin, H., Stutz, S., Weckwerth, W., and Heyer, A.G. (2017). Subcellular reprogramming of metabolism during cold acclimation in Arabidopsis thaliana. PLANT, CELL AND ENVIRONMENT 40, 602-610 DOI:

Fürtauer, L., Weckwerth, W., and Nägele, T. (2016). A Benchtop Fractionation Procedure for Subcellular Analysis of the Plant Metabolome. FRONTIERS IN PLANT SCIENCE 7, 1912. DOI:

Lisa Fürtauer and Thomas Nägele (2016): Approximating the stabilization of cellular metabolism by compartmentalization, THEORY IN BIOSCIENCES, 135: 73. DOI:

Ella Nukarinen, Thomas Nägele, Lorenzo Pedrotti, Bernhard Wurzinger, Andrea Mair, Ramona Landgraf, Frederik Börnke, Johannes Hanson, Markus Teige, Elena Baena-Gonzalez, Wolfgang Dröge-Laser, Wolfram Weckwerth (2016). Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation, SCIENTIFIC REPORTS 6:31697. DOI:

Matthias Nagler, Ella Nukarinen, Wolfram Weckwerth and Thomas Nägele (2015): Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana, BMC PLANT BIOLOGY 15, DOI:

Thomas Nägele, Arnd G. Heyer (2013): Approximating the subcellular organisation of carbohydrate metabolism during cold acclimation in different natural accessions of Arabidopsis thaliana. NEW PHYTOLOGIST, 198: 777–787. DOI:

Nägele, T., Stutz, S., Hörmiller, I. I. and Heyer, A. G. (2012): Identification of a metabolic bottleneck for cold acclimation in Arabidopsis thaliana. THE PLANT JOURNAL 72(1), 102-114. DOI:

Nägele, Thomas; Henkel, Sebastian; Hörmiller, Imke; Sauter, Thomas; Sawodny, Oliver; Ederer, Michael; Heyer, Arnd G. (2010): Mathematical modelling of the central carbohydrate metabolism in Arabidopsis thaliana reveals a substantial regulatory influence of vacuolar invertase on whole plant carbon metabolism. PLANT PHYSIOLOGY 153, 260–272. DOI: